How to generate a complete genome with hybrid assembly - The Sequencing Center
Using SPAdes
11_Genome assembly 2 – BCH709 Introduction to Bioinformatics
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output | PLOS ONE
Whole Genome de novo Assembly |Supporting de novo assembly training |Course |WGS sequencing | data analysis| Workshop
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
SPAdes
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output | PLOS ONE
Genome Assembly for Omics - Step-by-Step - Easiest way
BIRCH Tutorial - Assembly of contigs and scaffolds
Same number of contigs and scaffolds · Issue #396 · ablab/spades · GitHub
A workflow for producing hybrid assemblies. Top: SPAdes directly... | Download Scientific Diagram
de novo assembly of Illumina reads using Spades (Galaxy) - Bioinformatics Documentation
Frontiers | Metagenomic Data Assembly – The Way of Decoding Unknown Microorganisms
BIRCH Tutorial - Assembly of contigs and scaffolds
Genome assembly with Spades - ABRPI-Training
BIRCH Tutorial - Assembly of contigs and scaffolds
High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers | Scientific Reports
Modern technologies and algorithms for scaffolding assembled genomes | PLOS Computational Biology
SPAdes – Center for Algorithmic Biotechnology
Scaffolding and completing genome assemblies in real-time with nanopore sequencing | Nature Communications
Utah State University Bioinformatics Facility
Metagenome Assembly – Data Processing and Visualization for Metagenomics
